nucleus.examples.ascii_pileup -- Print an ASCII art pileup image.

Source code: nucleus/examples/ascii_pileup.py

Documentation index: doc_index.md

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Functions overview

Name	Description
ascii_pileup(sam_filename, query)	Returns an ASCII pileup image for the query as a list of strings.
main(argv)
read_str(left_pos, start, highlight_position, seq)	Returns an aligned and highlighted ASCII representation of sequence.

Functions

ascii_pileup(sam_filename, query)

Returns an ASCII pileup image for the query as a list of strings.

Args:
  sam_filename: The filename of the BAM/SAM file.
  query: String version of range.

main(argv)

read_str(left_pos, start, highlight_position, seq)

Returns an aligned and highlighted ASCII representation of sequence.