nucleus.examples.add_ad_to_vcf -- This example program adds the AD info field to a VCF file.

Source code: nucleus/examples/add_ad_to_vcf.py

Documentation index: doc_index.md

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It assumes that the AD field of the individual variant calls is already populated.

Sample usage: $ add_ad_to_vcf input.vcf.gz output.vcf.gz

Functions overview

Name	Description
get_variant_ad(variant)	Returns the allele depth for the Variant, calculated across its calls.
main(argv)

Functions

get_variant_ad(variant)

Returns the allele depth for the Variant, calculated across its calls.

main(argv)