Example programs

After running source install.sh, the executable versions of the example programs are located in bazel-bin/nucleus/examples/. For example, to run ascii_pileup, you would actually run a command like

bazel-bin/nucleus/examples/ascii_pileup input.sam chr3:99393

If you would like to rebuild just the example programs -- after modifying one of them, perhaps -- this can be done with

bazel build -c opt $BAZEL_FLAGS nucleus/examples:all

Here is a summary of the example programs included with Nucleus: